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metabric dna microarray datasets  (Thermo Fisher)


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    Thermo Fisher metabric dna microarray datasets
    Metabric Dna Microarray Datasets, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+datasets/DNA/pm41686639-557-27-26
    Average 99 stars, based on 1 article reviews
    metabric dna microarray datasets - by Bioz Stars, 2026-10
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    Related Articles

    Microarray:

    Article Title: Characterizing the omics landscape based on 10,000+ datasets
    Article Snippet: .. While microarray datasets generated by Affymetrix show a187 negative correlation between Mean and log2(Variance), this was not the case for Agilent microarray datasets. .. Agilent microarray188 datasets, on the other hand, display a negative correlation of log2(Variance) with Skewness and Kurtosis, respectively.

    Article Title: Molecular characterization of PANoptosis-related genes in chronic kidney disease
    Article Snippet: .. Based on an analysis of more than 250 Affymetrix microarray datasets derived from the glomerular and tubulointerstitial compartments of healthy controls and patients with CKD, several hub genes were identified, FOS being one of them [ ]. .. Several network pharmacology-based studies have suggested that FOS plays a key role in the mechanism of action of Fuzheng Huayu formula and Liuwei Dihuang pill for CKD treatment.

    Article Title: Systems and methods for high throughput compound library creation
    Article Snippet: .. See, Jiang, 2008, “Methods for evaluating gene expression from Affymetrix microarray datasets,” BMC Bioinformatics 9, 284, which is hereby incorporated by reference. ..

    Article Title: Crosstalk among podocytes, glomerular endothelial cells and mesangial cells in diabetic kidney disease: an updated review
    Article Snippet: .. Most sequencing technologies, such as scRNA-seq, primarily rely on existing Affymetrix microarray datasets to infer the pathogenesis of diabetic nephropathy. ..

    Article Title: TGFβ-Responsive Stromal Activation Occurs Early in Serrated Colorectal Carcinogenesis
    Article Snippet: A merged meta-dataset consisted of 132 conventional colorectal adenomas and 342 CRCs from 12 studies based on the Affymetrix microarray that was available from the ArrayExpress database under accession number E-MTAB-10089 accessed on 31 January 2021. .. We also obtained Affymetrix microarray datasets that consisted of conventional adenomas, serrated lesions, and/or CRCs, including GSE41258 (51 adenomas, 342 CRCs, and 9 CRC cell lines), GSE4045 (29 conventional CRCs and 8 serrated CRCs), GSE39582 (512 CRCs), GSE39084 (70 CRCs), GSE79460 (9 adenomas and 7 serrated lesions), GSE45270 (7 adenomas and 6 serrated lesions), GSE117606 (58 adenomas, 11 serrated lesions, and 74 CRCs), and GSE117607 (126 adenomas and 9 serrated lesions), which were downloaded from the GEO database, accessed on 7 December 2022. ..

    Article Title: Development and Validation of a Novel Four Gene-Pairs Signature for Predicting Prognosis in DLBCL Patients.
    Article Snippet: .. The training dataset 1 includes five Affymetrix microarray datasets and the training dataset 2 includes three Illumina microarray datasets were used for identification of prognostic genes. ..

    Article Title: Molecular characterization of PANoptosis-related genes in chronic kidney disease.
    Article Snippet: .. Based on an analysis of more than 250 Affymetrix microarray datasets derived from the glomerular and tubulointerstitial compartments of healthy controls and patients with CKD, several hub genes were identified, FOS being one of them [53]. .. Several network pharmacology-based studies have https://doi.org/10.1371/journal.pone.0312696.g009 PLOS ONE | https://doi.org/10.1371/journal.pone.0312696 October 28, 2024 17 / 25 suggested that FOS plays a key role in the mechanism of action of Fuzheng Huayu formula and Liuwei Dihuang pill for CKD treatment.

    Article Title: Characterizing the omics landscape based on 10,000+ datasets.
    Article Snippet: .. While Affymetrix microarray datasets show a negative correlation between ‘Mean’ and ‘log2(Variance)’, this is not the case for Agilent datasets. .. Agilent datasets, on the other hand, show a negative correlation between ‘log2(Variance)’ and both ‘Skewness’ and ‘Kurtosis’.

    Generated:

    Article Title: Characterizing the omics landscape based on 10,000+ datasets
    Article Snippet: .. While microarray datasets generated by Affymetrix show a187 negative correlation between Mean and log2(Variance), this was not the case for Agilent microarray datasets. .. Agilent microarray188 datasets, on the other hand, display a negative correlation of log2(Variance) with Skewness and Kurtosis, respectively.

    Derivative Assay:

    Article Title: Molecular characterization of PANoptosis-related genes in chronic kidney disease
    Article Snippet: .. Based on an analysis of more than 250 Affymetrix microarray datasets derived from the glomerular and tubulointerstitial compartments of healthy controls and patients with CKD, several hub genes were identified, FOS being one of them [ ]. .. Several network pharmacology-based studies have suggested that FOS plays a key role in the mechanism of action of Fuzheng Huayu formula and Liuwei Dihuang pill for CKD treatment.

    Article Title: Molecular characterization of PANoptosis-related genes in chronic kidney disease.
    Article Snippet: .. Based on an analysis of more than 250 Affymetrix microarray datasets derived from the glomerular and tubulointerstitial compartments of healthy controls and patients with CKD, several hub genes were identified, FOS being one of them [53]. .. Several network pharmacology-based studies have https://doi.org/10.1371/journal.pone.0312696.g009 PLOS ONE | https://doi.org/10.1371/journal.pone.0312696 October 28, 2024 17 / 25 suggested that FOS plays a key role in the mechanism of action of Fuzheng Huayu formula and Liuwei Dihuang pill for CKD treatment.

    Gene Expression:

    Article Title: Systems and methods for high throughput compound library creation
    Article Snippet: .. See, Jiang, 2008, “Methods for evaluating gene expression from Affymetrix microarray datasets,” BMC Bioinformatics 9, 284, which is hereby incorporated by reference. ..

    Sequencing:

    Article Title: Crosstalk among podocytes, glomerular endothelial cells and mesangial cells in diabetic kidney disease: an updated review
    Article Snippet: .. Most sequencing technologies, such as scRNA-seq, primarily rely on existing Affymetrix microarray datasets to infer the pathogenesis of diabetic nephropathy. ..



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    TRIM21 is elevated in astrocytes across MS. A Analysis of TRIM21 mRNA expression in the control and white matter lesion tissues of MS patients based on gene expression profiling microarray data ( <t>GSE138614</t> ). B TRIM21 mRNA levels in PBMC samples of healthy controls (n = 12) and MS patients (n = 20) were quantified by RT-qPCR. C Representative immunoblots and corresponding quantification of TRIM21 protein levels in brain tissues from EAE mice at 28 dpi (n = 5). D Representative immunoblot images and the corresponding quantitative analysis of TRIM21 protein expression in spinal cord tissues from EAE mice at 28 dpi (n = 5). E Immunofluorescence co-localization analysis of TRIM21 (red) and the astrocyte marker GFAP (green) in brain and spinal cord sections from control and EAE mice at 28 dpi (n = 5). Scale bar, 50 µm
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    SIRT3 is downregulated in RCC. ( A ) Based on the GEO <t>GSE53757</t> dataset, SIRT3 mRNA levels in RCC tissues were compared with those in normal tissues. ( B ) SIRT3 protein levels in RCC tissues were analyzed in comparison to adjacent normal tissues using CPTAC data. ( C ) SIRT3 protein levels in RCC tissues and normal tissues were detected using immunohistochemistry (IHC). A scatter plot was generated to display the expression of SIRT3 in adjacent normal tissues versus RCC tissues. ( D, E ) Enrichment plots were produced to illustrate the gene expression signatures for proliferation (CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN) and migration (GOBP_ENDOTHELIAL_CELL_MIGRATION). *** P < 0.001.
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    TRIM21 is elevated in astrocytes across MS. A Analysis of TRIM21 mRNA expression in the control and white matter lesion tissues of MS patients based on gene expression profiling microarray data ( GSE138614 ). B TRIM21 mRNA levels in PBMC samples of healthy controls (n = 12) and MS patients (n = 20) were quantified by RT-qPCR. C Representative immunoblots and corresponding quantification of TRIM21 protein levels in brain tissues from EAE mice at 28 dpi (n = 5). D Representative immunoblot images and the corresponding quantitative analysis of TRIM21 protein expression in spinal cord tissues from EAE mice at 28 dpi (n = 5). E Immunofluorescence co-localization analysis of TRIM21 (red) and the astrocyte marker GFAP (green) in brain and spinal cord sections from control and EAE mice at 28 dpi (n = 5). Scale bar, 50 µm

    Journal: Journal of Neuroinflammation

    Article Title: TRIM21 promotes astrocyte-mediated neuroinflammation in experimental autoimmune encephalomyelitis by stabilizing RGMa via K33-linked ubiquitination

    doi: 10.1186/s12974-026-03769-4

    Figure Lengend Snippet: TRIM21 is elevated in astrocytes across MS. A Analysis of TRIM21 mRNA expression in the control and white matter lesion tissues of MS patients based on gene expression profiling microarray data ( GSE138614 ). B TRIM21 mRNA levels in PBMC samples of healthy controls (n = 12) and MS patients (n = 20) were quantified by RT-qPCR. C Representative immunoblots and corresponding quantification of TRIM21 protein levels in brain tissues from EAE mice at 28 dpi (n = 5). D Representative immunoblot images and the corresponding quantitative analysis of TRIM21 protein expression in spinal cord tissues from EAE mice at 28 dpi (n = 5). E Immunofluorescence co-localization analysis of TRIM21 (red) and the astrocyte marker GFAP (green) in brain and spinal cord sections from control and EAE mice at 28 dpi (n = 5). Scale bar, 50 µm

    Article Snippet: The microarray dataset GSE138614 was retrieved from the Gene Expression Omnibus (GEO) repository of the National Center for Biotechnology Information ( https://www.ncbi.nlm.nih.gov/geo/ ).

    Techniques: Expressing, Control, Gene Expression, Microarray, Quantitative RT-PCR, Western Blot, Immunofluorescence, Marker

    SIRT3 is downregulated in RCC. ( A ) Based on the GEO GSE53757 dataset, SIRT3 mRNA levels in RCC tissues were compared with those in normal tissues. ( B ) SIRT3 protein levels in RCC tissues were analyzed in comparison to adjacent normal tissues using CPTAC data. ( C ) SIRT3 protein levels in RCC tissues and normal tissues were detected using immunohistochemistry (IHC). A scatter plot was generated to display the expression of SIRT3 in adjacent normal tissues versus RCC tissues. ( D, E ) Enrichment plots were produced to illustrate the gene expression signatures for proliferation (CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN) and migration (GOBP_ENDOTHELIAL_CELL_MIGRATION). *** P < 0.001.

    Journal: Scientific Reports

    Article Title: SIRT3 suppresses renal cancer progression by regulating IDH2 acetylation

    doi: 10.1038/s41598-026-37783-6

    Figure Lengend Snippet: SIRT3 is downregulated in RCC. ( A ) Based on the GEO GSE53757 dataset, SIRT3 mRNA levels in RCC tissues were compared with those in normal tissues. ( B ) SIRT3 protein levels in RCC tissues were analyzed in comparison to adjacent normal tissues using CPTAC data. ( C ) SIRT3 protein levels in RCC tissues and normal tissues were detected using immunohistochemistry (IHC). A scatter plot was generated to display the expression of SIRT3 in adjacent normal tissues versus RCC tissues. ( D, E ) Enrichment plots were produced to illustrate the gene expression signatures for proliferation (CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN) and migration (GOBP_ENDOTHELIAL_CELL_MIGRATION). *** P < 0.001.

    Article Snippet: The GSE53757 microarray dataset was obtained through the National Center for Biotechnology Information Gene Expression Omnibus database (NCBI GEO, https://www.ncbi.nlm.nih.gov/gds/?term=GSE53757 ).

    Techniques: Comparison, Immunohistochemistry, Generated, Expressing, Produced, Gene Expression, Migration